![]() ![]() Pathway based data integration and visualization. and Brouwer, C., Pathview: an R/Bioconductor package for Not, the same set of pathway.id will be applied to all species.Ī named character vector, either "succeed" or "failed", indicating theĭownload status of corresponding pathways. Length of species should be either 1 or the same as pathway.id, if Scientific name and the common name are always mapped to Species can be specified as either kegg code, scientific name or theĬommon name. Default kegg.dir="." (current working directory).Ĭharacter, the file type(s) to be downloaded, either KEGG pathway dataįile (xml) or image file (png). "Homo sapiens" (scientific name) or "human" (common name).Ĭharacter, the directory of KEGG pathway data file (.xml) and image file Default species="hsa", it is equivalent to use either When KEGG ortholog pathway is considered, Default pathway.id="00010".Ĭharacter, either the KEGG code, scientific name or the common name of ![]()
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